PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G238900.2
Common NameB456_011G238900, LOC105776854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 686aa    MW: 75691.2 Da    PI: 7.0226
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G238900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23121222199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +
  Gorai.011G238900.2 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLR 209
                         89****************************985444444..8999*********************************************3 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                            +++ l+v+++r+
  Gorai.011G238900.2 210 --ADNGDLCVGIRRA 222
                         ..477888****996 PP

2Auxin_resp112.15.6e-37281364183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa++a+++++FevvY+Pr+st+eF+vk+++v++a+++++ +GmRfkm fetedss++++ +Gt++  + +dp+rWpnS+Wr+L+
  Gorai.011G238900.2 281 AASRAASGQPFEVVYYPRTSTPEFCVKASSVRAAMQIQWYPGMRFKMPFETEDSSRISWfMGTISTAKVVDPIRWPNSPWRLLQ 364
                         68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-29113224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-36116224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-21120221No hitNo description
PfamPF023621.5E-21121222IPR003340B3 DNA binding domain
SMARTSM010196.6E-22121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183121223IPR003340B3 DNA binding domain
PfamPF065073.7E-32281364IPR010525Auxin response factor
PROSITE profilePS5174520.044599682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN  60
LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LVPLRENSFG VEDDGFDGNV GVENPEKSAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSASG  240
TSGSQIGSYS PFLREGESKL MRKDCSGDPR GRVRADSVIE AASRAASGQP FEVVYYPRTS  300
TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAKVV DPIRWPNSPW  360
RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDFSFLNQIP  420
MPSFSGNTFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR  480
TAPPIRLSGD NFCSDHPNNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS  540
QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKEH QKTDLGLETG  600
HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE  660
PFSEFMKTAR RLTILMDSSS DNLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-78138533388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455248.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0D2UXF00.0A0A0D2UXF0_G
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]